Here are different ways to say "I do not understand"
What did you say?
What do you mean?
I don't understand.
Excuse me, I didn't get it.
Excuse me, can you please repeat it?
Sorry, I did not catch that.
I missed that.
That went right over my head.
Can you please speak slowly?
I don't get it.
Do you mind explaining it again?
I’m afraid it is not clear what you saying.
Would you mind clarifying what you said?
I am sorry, but I don’t follow what you are saying.
I don’t catch what you said. Sorry.